PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000172804
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 280aa    MW: 31450.1 Da    PI: 8.117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000172804genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182878155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  MDP0000172804 28 CKFVGVRQRS-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAAYLLRG 78
                   799****999.7*********33....36**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-312888No hitNo description
PfamPF008471.4E-122878IPR001471AP2/ERF domain
PROSITE profilePS5103219.9942986IPR001471AP2/ERF domain
SMARTSM003802.8E-362992IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-192987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-282987IPR001471AP2/ERF domain
PRINTSPR003671.5E-73041IPR001471AP2/ERF domain
PRINTSPR003671.5E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEHQAPKQQK GVLANKQRKF KERTKSKCKF VGVRQRSSGK WVAEIKDTTK KIRMWLGTFE  60
TAEEAARAYD EAAYLLRGSN TRTNFATHVP SNSPLSLKIX NLLNKKKSLK QCPVSSTPNS  120
LNSTPTATST RTSNKYTSFS DGSAFSIATF SETFLPNCKS QKNLQVFDDA YRPDISNCID  180
DLQPGLFHNH FGLQWPLLTG FDQLPITHEG MDLAKGNALT VQRSVAVEPE VTEFECLEVE  240
RQISASFYTM NGENEYFDNE YNAGDALWDL PSLSQLFCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-153089363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A8e-153091668ATERF1
2gcc_A8e-153091668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384383.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM5WFH41e-117M5WFH4_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s21090.17e-83(Populus trichocarpa)
STRINGVIT_06s0004g00490.t019e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-25related to AP2 11